Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs4239250 | chr17:26103087 | A/G | 3.84E-7 | 216 | 9.1 | 10.67 | 6.08 | KM Plot |
| BLCA | rs4272382 | chr8:8433488 | C/T | 2.22E-11 | 216 | 10.33 | 8.27 | 3.6 | KM Plot |
| BLCA | rs4273537 | chr4:70269744 | G/T | 3.83E-7 | 212 | 8.47 | 13.17 | 1.83 | KM Plot |
| BLCA | rs436688 | chr8:50809020 | A/G | 2.44E-5 | 216 | 9.97 | 9.47 | 1.87 | KM Plot |
| BLCA | rs4377975 | chr8:50784827 | T/A | 2.78E-5 | 214 | 10.6 | 9.03 | 1.87 | KM Plot |
| BLCA | rs4429380 | chr18:5242053 | A/G | 4.89E-8 | 214 | 9.07 | 12.82 | 4.73 | KM Plot |
| BLCA | rs45455000 | chr15:41001187 | T/G | 2.15E-6 | 214 | 10.68 | 7.43 | 5.43 | KM Plot |
| BLCA | rs45503494 | chr15:40998986 | T/C | 2.15E-6 | 214 | 10.68 | 7.43 | 5.43 | KM Plot |
| BLCA | rs45504895 | chr15:40995916 | T/C | 2.36E-6 | 212 | 10.72 | 7.43 | 5.43 | KM Plot |
| BLCA | rs45507396 | chr15:41024305 | A/G | 1.6E-6 | 213 | 10.67 | 7.43 | 5.43 | KM Plot |
| BLCA | rs45559631 | chr15:40990011 | A/C | 2.38E-6 | 213 | 10.72 | 6.97 | 6.13 | KM Plot |
| BLCA | rs45579836 | chr15:41018850 | T/C | 1.6E-6 | 213 | 10.68 | 7.2 | 5.43 | KM Plot |
| BLCA | rs45585734 | chr15:41024489 | C/G | 1.6E-6 | 213 | 10.67 | 7.43 | 5.43 | KM Plot |
| BLCA | rs4567502 | chr11:115032566 | C/G | 5.43E-11 | 216 | 9.63 | 7.85 | 1.42 | KM Plot |
| BLCA | rs4572168 | chr11:116555926 | A/G | 0 | 216 | 2.07 | 8.7 | 9.45 | KM Plot |